PubMind-DB: Literature-derived Variant Search

Input Settings (for all variant types)

Search by Gene or Disease or Reference ID

Input the Term(s)

Match Operator (each term on a separate line)

Enter one term per line. "Main Search" supports OR only; for AND please use "Variant Search". Valid input examples: BRCA1, orofacial cleft, MONDO_0005180, PMC6310952.

Variant Identifier Search

Enter one identifier (Gene:c./p.Variant format, or RSID) per line, use p. and c. to indicate protein and cDNA variants: Enter one identifier per line. The p. and c. notation is required for protein and cDNA variants. For protein change, 1 letter and 3 letter are both supported. E.g., BRCA1:p.R133C and BRCA1:p.Arg133Cys are the same.
Even though user could search cDNA change using either BRCA1:c.A122T or BRCA1: c.122A>T (they are considered the same), PubMind uses the representation of A122T instead of 122A>T to represent DNA change.

Term Search (more options for each vairant type)

Single-Nucleotide Variant (SNV)

Gene Fusion

Structural Variant (SV)

Copy Number Variant (CNV)

SNV Input Settings

Select a Search Field

Input the Term(s)

Match Operator (each term on a separate line)

Enter one term per line. Choose AND to require all lines to match, OR to match any line.

Genomic Search

Genomic Variant Search (chr_pos_ref_alt)

Coordinate Location Search (chr_start_end)

Term-based Search

Variant Identifier Search

Term Search (more options for each vairant type)

Genomic Search

🧬 November 7 2025 – New Function Provided